All posts by Alexia Sutton

Introducing the preprint deposit service

The Office of Scholarly Communication, jointly with Open Research Systems (Digital Initiatives) and Research Information team have developed a new preprint deposit service for University of Cambridge researchers, which will be available on the week commencing 11th March 2024.

Why offer a preprint service?

Although researchers are generally well-served by existing subject repositories/preprint servers, we have identified an unmet need for those:

  • Who have no suitable subject repository/preprint server, or
  • Whose subject repositories/preprint server may be unable to offer long-term preservation, or
  • Who wish to use the University’s repository instead of existing subject repositories/preprint servers.


Why offer a preprint service now?

Following recent upgrades to both the University’s repository Apollo and Elements (the system that the University uses to hold and manage data on research activity), we are now in a position where we can offer a preprint deposit service.

What can be deposited?

Cambridge University researchers can deposit new (unpublished) preprints that have not been submitted to an external subject repository/preprint server.

Researchers can also deposit published preprints if they have concerns about its long-term preservation.

Can subsequent versions of a preprint be deposited?

New versions of a preprint can be added to an existing preprint record.

What happens once the preprint has been accepted for publication?

Researchers are asked to deposit the accepted manuscript as usual, via Elements. The Open Access Team will link the preprint record and accepted manuscript record in Apollo. The preprint and the accepted manuscript need to be separate records to ensure that the first deposit date of the accepted manuscript is not obscured, which is important for REF compliance purposes.

A new institutional open access fund for the University of Cambridge

Open Access is a powerful tool that enables researchers to share their research and maximise the impact of their work. However, the reality is that gold open access is a business model that is based on paying to publish, and it’s a business model that is primarily supported by research funders. What that means in practice is that gold open access often comes with a price tag that effectively excludes unfunded researchers.

The University of Cambridge has established a new institutional open access fund to provide financial support for unfunded researchers across the collegiate University. Researchers who do not have access to grant funds with which to pay the open access fees will be able to use the fund to pay the open access fees for their research or review papers in fully open access journals.  

Professor Anne Ferguson-Smith, Pro-Vice-Chancellor for Research explains that:

“This is significant step in ensuring that all University of Cambridge researchers can opt for gold open access publishing. We are proud to establish this fund that will be especially beneficial to early career researchers as well as other researchers in the collegiate University who are not eligible for the open access funds that are provided by grant funders. Significant inequalities remain in the global scholarly publishing system, however, so we continue our commitment to support different open access solutions that are available to any researchers, both within and outside the University”.

The new fund is one of the many ways that the University helps researchers make their research open access and complements our many Read & Publish deals, the Rights Retention Pilot and the facilitation of green self-archiving in the University’s institutional repository, Apollo. 

Who can use the new institutional open access fund?

Researchers who have a strong connection (typically research staff and students) with the University of Cambridge (including the Colleges) who have no way of paying for open access fees in fully open access journals.

What will the new institutional open access fund cover?

The fund can be used to pay open access fees for full research articles or non-narrative review papers in fully open access journals, provided there is no other way of paying the fee (for example, where there is no Read & Publish deal available to any of the authors, or where none of the author team has access to any funding).

How will the new institutional open access fund work?

The Open Access team can provide in principle funding decisions but cannot guarantee payment until a paper has been accepted for publication. Researchers are encouraged to seek an in-principle decision before incurring any fees by emailing the Open Access Team.

Where can I find more information about the new institutional open access fund?

There is more information on the Open Access website about the institutional fund, and the Open Access Team is available to answer any queries.

What about the bigger issue?

We are very conscious about the wider challenges with author-pays models of open access, for example for unaffiliated researchers and those in institutions without access to funding of this sort, and especially of the global equity issues that arise. We held several strategic workshops looking at these issues earlier this year and will continue to work towards finding a more equitable future for open access scholarly publishing.

What questions reveal about researchers’ attitudes to Open Access

By Dr Bea Gini, Training Coordinator

‘Right, that concludes this part of the training session, are there any questions?’ 

I’ve asked this scores of times in the last academic year, and it’s always fascinating to hear what questions emerge. Some have come up often enough that they have earned themselves a new slide in the training session. Others can be really niche, or reveal something about a specific field that is different to all other disciplines. Sometimes a question beautifully cuts through all the frills to challenge a key aspect of what has been discussed. In all cases, they have shown thoughtfulness and a real wish to engage with Open Research. 

Over the last academic year, we trained over 300 researchers on Open Research. In this post, I teased out a few of the most interesting or common questions they have asked about Open Access (OA) to explore what they may reveal about how they relate to the idea of OA. This is not an FAQ page, nor is it a comprehensive resource about OA at Cambridge. I will resist the urge to answer any of the questions, but rather focus on the themes they raise. 

Incentives 

Naturally, many of the questions reflect the incentives in research careers. When speaking to Arts & Humanities groups, the aim to turn a PhD thesis into a monograph is common, so questions are raised over publishers’ attitudes to OA theses and possible access levels for theses in Apollo. With ‘publish or perish’ still a common mantra, we have carefully considered how PhD graduates can deposit their theses in the repository without compromising future publishing deals. Many publishers now realise that an OA thesis is not necessarily a problem, but this is still a debated issue and more conversations between publishers, students, supervisors and libraries are needed.  

With STEMM groups, Registered Reports often come up, prompting discussions of their benefits in securing a publication avenue early and improving reporting practices. And yet the bias against negative results is profoundly embedded and hard to shake. More than once, I was asked ‘but if I do the experiment and get negative results, can I still go back and change the method to see if I can get positive ones?’. The first time I was a little baffled, worrying that I had not properly explained the problems with under-reporting negative results. Yet with further discussion it became clear that the researchers agreed with the principle, but felt that publishing positive results was more likely to earn them citations and prestige. In such a competitive environment, who can blame them for trying to give themselves the best chance?  

At other times, it’s heartening to see that incentives are better aligned between researchers, the academic community, and the public at large. I’ve received growing numbers of questions about how to disseminate findings to colleagues, the general public, and the research subjects themselves. In a few cases, researchers were grappling with dissemination strategies in rural areas of the developing world, where the usual solutions like blogs and podcasts would not work. It prompted me to think more broadly about dissemination strategies, making sure that biases for particular parts of the world or audience types do not come to dominate our suggestions.  

Barriers to Open Access 

By far the most common questions I hear is ‘where can I find the money?’, usually asked with some frustration at the gap between what seems to be a great idea (Open Access) and the seemingly insurmountable barrier of Article or Book Processing Charges. This frustration is more common in the Arts, Humanities and Social Sciences, whereas in Science, Technology, Engineering and Maths grants often cover publication costs, as long as the applicant remembers to factor those in. Exorbitant costs, as well as concerns about the type of license and dealing with privacy and qualitative data, can contribute to disillusionment with the OA movement, which I fear is growing among AHSS researchers.  There is no easy solution to this, especially for researchers who are not funded through Research Councils, and for monographs that can cost close to –or even over- £10,000. But some progress has been made: Read And Publish deals may bridge that gap in some cases, and some alternative business models for monographs are emerging.  

Another common question when I speak to enthusiastic PhD students is ‘how can I convince my supervisor to publish OA?’. First of all, it’s great that these discussions are happening between students and supervisors, a great example of where supervision can be a high-value exchange of ideas. The deeper question concerns the decision-making dynamics within the student-supervisor relationship. I have seen extreme cases where supervisors delegated virtually all decisions to the student, trusting in their judgement and the pedagogic value of making mistakes; as well as the opposite, where the students were expected to follow instructions to the letter in almost every aspect of their research. As is usually the case, the optimum must rest somewhere between those extremes. When it comes to OA, are reluctant supervisors helpfully schooling their students in the strategising needed for a successful research career, or are they stifling innovation in a new generation of researchers?  

The last barrier to mention is lack of knowledge. A variety of questions arise on issues of copyright, Green and Gold OA, identifying manuscript versions, funders policies, and more. The OA landscape is still developing as we continue to experiment with business models, agreements, workflows, and policies. This means that currently there is a high level of complexity and things change year on year. Researchers, especially those in their early career, have to juggle a large and diverse portfolio of skills, so they could be forgiven for shrugging OA away with a ‘I don’t need to know’. Yet their natural curiosity and belief in the power of free information leads many of them to ask probing questions to understand this landscape. Luckily, these questions are the easiest to answer. We constantly produce and revise training materials to boost researcher’s knowledge, and we have helpdesks and webpages where the answer can be at their fingertips.  

All in all 

Taken together, these questions tell us two things. First, researchers are engaging with us, they want to understand how OA works and have the confidence to embrace it. Second, there are common barriers relating to  career incentives, costs and knowledge. By listening carefully and expanding the dialogue with all disciplines, we can work together to reduce or overcome those barriers.  

Research Data at Cambridge – highlights of the year so far

By Dr Sacha Jones, Research Data Coordinator

This year we have continued, as always, to provide support and services for researchers to help with their research data management and open data practices. So far in 2020, we have approved more than 230 datasets into our institutional repository, Apollo. This includes Apollo’s 2000th dataset on the impact of health warning labels on snack selection, which represents a shining example of reproducible research, involving the full gamut: preregistration, and sharing of consent forms, code, protocols, data. There are other studies that have sparked media interest for which the data are also openly available in Apollo, such as the data supporting research that reports the development of a wireless device that can convert sunlight, carbon dioxide and water into a carbon-neutral fuel. Or, data supporting a study that has used computational modelling to explain why blues and greens are the brightest colours in nature. Also, and in the year of COVID, a dataset was published in April on the ability of common fabrics to filter ultrafine particles, associated with an article in BMJ Open. Sharing data associated with publications is critical for the integrity of many disciplines and best practice in the majority of studies, but there is also an important responsibility of science communication in particular to bring research datasets to the forefront. This point was discussed eloquently this summer in a guest blog post in Unlocking Research by Itamar Shatz, a researcher and Cambridge Data Champion. Making datasets open permits their reuse, and if you have wondered how research data is reused and then read this comprehensive data sharing and reuse case study written by the Research Data team’s Dominic Dixon. This centres on the use and value of the Mammographic Image Society database, published in Apollo five years ago. 

This year has seen the necessary move from our usual face-to-face Research Data Management (RDM) training to provision of training online. This has led us to produce an online training session in RDM, covering topics such as data organisation, storage, back up and sharing, as well as data management plans. This forms one component of a broader Research Skills Guide – an online course for Cambridge researchers on publishing, managing data, finding and disseminating research  – developed by Dr Bea Gini, the OSC’s training coordinator. We have also contributed to a ‘Managing your study resources’ CamGuide for Master’s students, providing guidance on how to work reproducibly. In collaboration with several University stakeholders we released last month new guidance on the use of electronic research notebooks (ERNs), providing information on the features of ERNs and guidance to help researchers select one that is suitable. 

At the start of this year we invited members of the University to apply to become Data Champions, joining the pre-existing community of 72 Data Champions. The 2020 call was very successful, with us welcoming 56 new Data Champions to the programme. The community has expanded this year, not only in terms of numbers of volunteers but also in terms of disciplinary focus, where there are now Data Champions in several areas of the arts, humanities and social sciences in particular where there were none previously. During this year, we have held forums in person and then online, covering themes such as how to curate manual research records, ideas for RDM guidance materials, data management in the time of coronavirus, and data practices in the arts and humanities and how these can be best supported. We look forward to further supporting and advocating the fantastic work of the Cambridge Data Champions in the months and years to come.  

Open Access and REF 2021: “Is This Article Non-Compliant?”

By Dr Debbie Hansen, Senior Open Access Adviser, Office of Scholarly Communication

Through much of this REF period, there has been a focus on encouraging Cambridge authors to deposit their accepted manuscripts into our institutional repository.  The Open Access Team has tackled the sometimes tricky tasks of making sure the right version has been deposited with the correct embargo, advising on funders’ open access requirements and managing the payments for gold open access from the UKRI and COAF block grants. 

With the REF period ending, the University is now finalising lists of research outputs to be submitted to REF2021. Alongside this activity, some members of the Open Access Team have been focussing on compliance indicators for the REF open access policy. In Symplectic Elements, the University’s research information management system, all journal or conference articles which fall within the period of the REF open access policy are labelled as either Compliant or Non-compliant.   

Unfortunately, from an administrative point of view, this is not as straightforward as it may seem (but it is fortunate for compliance).  This compliance indicator is set automatically from calculations using the acceptance, first publication and deposit dates as well as the repository embargo lift date.  It is, if you like, a first-pass indicator.  ‘Non-compliant’ articles may end up as being compliant or REF eligible as they may, for example: 

  1. have gaps in their metadata such as missing acceptance or publication dates; 
  2. have incorrect publication dates in the external metadata records (one article can have around 10 separate metadata records (e.g. from Scopus, Crossref, Europe PMC, etc.) and Elements takes the earliest publication date from all the metadata records associated with an article.  01/01/YYYY is a common red herring where only the year of publication (YYYY) has been recorded and the month and day fields have been automatically filled with a default value);  
  3. have embargo lift dates greater than 12 months from first publication (Panel C and D articles can have embargo lengths of up to 24 months but the system does not recognise this); 
  4. be compliantly deposited in a different non-commercial open access repository; 
  5. be eligible for one of the REF exceptions to the policy; 
  6. be published gold open access and so do not need to be deposited in a repository to fulfil the REF open access criteria. 

If an article is showing as non-compliant, it generally requires individual investigation by a team member.  However, as has been raised in previous blogs, we try to develop processes to balance staff resources against the sheer numbers of articles.  For this problem, I will mention two tools we have been using to address in bulk three common article scenarios: missing acceptance or publication dates, deposited in another repository and published gold open access. 

Missing acceptance or publication dates 

Acceptance dates are not always openly provided by a journal or conference and some publication dates can be hard to find (e.g. for some humanities, arts and social science journals) or have been missed for some other reason.  In these instances, the author may be able to help.  For example, they may be able to check past correspondence with the journal or with co-authors.  

Our colleagues in the University Research Information Office, Agustina Martínez-García and Owen Roberson, developed an internal, simple to use tool, aptly named LastMinute.CAM1.  This tool uses an article’s Elements identifier to create an article-customised form that can be sent to an author to request missing information.  The form is pre-populated with article title and other information already held about an article (e.g. it’s digital object identifier (DOI)) and the author can fill in missing acceptance or publication dates.  Once the form is submitted, the data populates a new record for the article in Symplectic Elements and the data is used, alongside all the other data for that article for the compliance calculations.  We have tried to use LastMinute.CAM for this purpose on a considered basis (we do not wish to contact authors unnecessarily) and have attempted to resolve the issue of missing dates, and links to articles in other repositories (next section), in this way for hundreds of papers via mail merge lists. 

Article deposited in another repository 

Some authors have been contacted with the LastMinute.CAM form because their article was deposited late in Apollo, or there is no deposit at all, but their article may be compliant in another repository (e.g. deposited by a co-author at another university).  LastMinute.CAM is integrated with Unpaywall: the application searches Unpaywall data via its Application Programming Interface (API) and records in the form the link to the preferred open access location, together with the article version if available.  A recipient of the form can accept this, or remove it (they may know it was not compliantly deposited) or amend the repository link and version already populated in the form with an alternative.   

Having a link to an article in another repository is of course a first step.  A team member will need to check the link (we have found URLs to non-repository web pages) and investigate whether the article is compliantly deposited in the other repository.  However, when we do find a compliant deposit, this source is already recorded for us, removing some of the legwork we would otherwise need to do to complete our records. 

Article published gold open access 

Unpaywall has also been a great tool for identifying articles that have been published open access through the gold route.  The Unpaywall Simple Query Tool accepts a list of up to 1000 DOIs and returns a report of the open access status of the article associated with each DOI.  We do need to analyse the results carefully and discard, for example, those made open through the accepted manuscript and the green route, published versions without an open licence (bronze open access) and those published with an open licence but only after a defined time delay.  Once we are happy with the cleaned list this can be used as input to an Elements API script (also developed by Agustina Martínez-García) to bulk annotate articles that have been identified as being published as gold open access.  To date we have identified over 1000 articles in this way. 

Summary 

Henceforth we plan to run the gold OA bulk ‘exception’ process monthly and have in the background the option to use LastMinute.CAM further to gather missing information via targeted mail shots to authors.  We will also be addressing in an automated way those articles that were compliantly deposited and with the correct embargo applied but not recognised as compliant by the system due to a ‘perceived’ too-long embargo.  These activities will leave a far more manageable set of articles, showing as non-compliant, for which more detailed investigations into why articles are being labelled non-compliant can be made and action taken (such as the application of eligible REF exceptions) as appropriate. 

One final comment, once the submission to REF has been made there will be a period of reflection. Effective tools, like those mentioned here, that help with making our processes more efficient will feature in this review.  This review will help to define our future activities in this space.  

1 This tool is only available internally to University of Cambridge researchers, and is not indexed in Google or any search engine 

Open Access for Librarians: Putting Together the Puzzle

Claire Sewell, Research Support Librarian, Betty & Gordon Moore Library

This Open Access week I’ve been reflecting back on my time training library staff in research support. As anyone working in this area will know, an understanding of the principles of open access is key to getting to grips with many of the issues covered by the scholarly communications remit so it’s important that librarians get a good grasp of the basics. Open access is a topic rich in terminology and interconnected concepts which can make teaching it a little bit like putting together a jigsaw puzzle with no finished image to guide you. Many introductory sessions begin with an overview of what open access actually means – the process of making the outputs of funded research available online for anyone to read. So far, so simple but even this assumes some knowledge of the current academic publishing system. I often need to spend longer talking about this than I had planned before we can move onto the rest of the session and the pauses don’t stop there. Outlining the importance of open access involves explaining the REF, describing the practicalities means defining what we mean by a repository and describing the different types of OA can be hard when your audience don’t understand the concept of an embargo. 

No two audiences are ever the same as everyone has a different view of the finished picture and I need to be able to provide them with the pieces they need to complete their own OA puzzle. As a result, every session has to be adaptable to the needs of the people in the room. Whilst I still have an overall plan for any open access session, I find it’s a good idea to have some small pre-prepared slides or activities which embed key concepts that I can include if needed. I’ve also come to the realisation that it doesn’t matter which order you place your slides in as you will have to shuffle through them at random as your audience asks questions! This is not always a bad thing as it keeps me on my toes and improves my practice.  

The most common questions I get are detailed below: 

  1. Definitions of various terms – audiences need to know what things such as embargoes, repositories, author accepted manuscript and APC are, but it can be hard to explain one without an understanding of some element of another. Having some type of primer on hand can really help people to understand the language you’re using. 
  2. Manuscript versions – something a lot of people struggle with is which version of a manuscript is which and how this impacts sharing via OA. I find that a visual representation offers the best explanation and often rely on this graphic from our OA FAQs – something I’ve been told makes all the difference. 
  3. Practicalities of OA – this will vary between institutions but a common question is how you actually go through the process of making outputs open. If you can, building in time for a demonstration and/or some hands-on experience can really help learners to understand the process and find all sorts of tricky problems for you to explain! 

So, the message is – no matter who your audience is, it pays to be flexible. Much like the rest of the open access landscape one size definitely does not fit all! 

Preparing for the end of COAF

The Open Access team are getting ready for the end of Charity Open Access Fund (COAF), which is due to dissolve on 30th September 2020.  

From 1st October 2020 onward, there are going to be changes to the block grants that we receive, and as a result, there will be a change in our policies on whether or not we can cover researchers’ article processing charges (APCs).  

We have outlined how researchers should go about securing funding for the APC’s below: 

Funder name Are article processing charges covered by a block grant? How do I pay for my article processing charge? 
UKRI Yes No change: researchers should continue to upload their paper to us for a funding decision
Wellcome Trust Yes No change: researchers should continue to upload their paper to us for a funding decision
Cancer Research UK Yes No change: researchers should continue to upload their paper to us for a funding decision
British Heart Foundation YesNo change: researchers should continue to upload their paper to us for a funding decision
Blood Cancer UK No- authors must include cost in their grant application  1. For payment, contact research@bloodcancer.org.uk
2. Upload your paper to ensure REF compliance. 
Parkinson’s UK No- authors must include cost in their grant application  1. For payment, contact researchapplications@parkinsons.org.uk,
2. Upload your paper to ensure REF compliance. 
Versus Arthritis No – authors must request support direct from funder  1. Use funder’s Grant Tracker for OA support,
2. Upload your paper to ensure REF compliance. 
Multiple funders acknowledged  If your paper includes funding from UKRI, Wellcome Trust, Cancer Research UK or British Heart Foundation then we may be able to help with the APC. Researchers should upload their paper to us for a funding decision

There is no change in the funder’s open access policies for the rest of 2020. However, there are significant changes due in 2021, specifically to Wellcome Trust and Cancer Research UK.  

We have outlined the policy changes in the table below: 

Funder name Change? Outline of policy 
Wellcome Trust Changesee new policy document   1. Policy covers original research articles, 
2. Policy applies to papers submitted for publication after 1/1/2021, 
3. Papers must be made immediately open access (no embargo allowed) in Europe PMC, 
4. Papers must be published with a CC BY licence, 
5. Papers must be published in a journal that is indexed in DOAJ (Wellcome will no longer cover APCs for subscription journals)
6. The authors must retain their copyright. 
Cancer Research UK Changesee new policy document 1. Policy covers original research articles, 
2. Policy applies to all papers after 1/1/2021, 
3. Papers must be made immediately open access (no embargo allowed) in Europe PMC,
4. Papers must be published with a CC BY licence. 
Multiple funders acknowledged  Any papers acknowledging Wellcome Trust or Cancer Research UK must be compliant in order to access funds. 

To summarise:

From 1 October 2020, authors should continue to submit their papers to the Open Access Team as usual via our website. The Open Access Team will continue to advise on the best course of action to meet funder requirements, but we may not always be able to pay APCs. 

The funders’ policies remain the same until 1st January 2021. We advise authors covered by Wellcome Trust and Cancer Research UK to familiarise themselves with the changes to their funder’s open access policies, which are outlined in COAF’s table